Requirements
- if not all dependencies are satisfied by R environment, try to install additional libraries
dplyr, ggplot2, tidyr, Hmisc
- loading libraries
[1] "Required package(s) dplyr, ggplot2, tidyr, Hmisc are already installed."
[1] "Required package(s) dplyr, ggplot2, tidyr, Hmisc are loaded."
Sample overview
Data import
- Checking if result file(s) are available:
- Importing result table(s):
[1] "Import of counts table complete."
Quality control
Total number of mapped reads per sample

Number of individual barcodes per sample

Number of missing barcodes per sample

Number of barcodes per gene, per sample
`summarise()` has grouped output by 'sample'. You can override using the
`.groups` argument.

Read count distribution, per sample (capped at 1000 barcodes)

Number of reads per barcode, per sample

Top 10 most abundant barcodes, per sample

Cumulative read count distribution and population equality

Sample and replicate correlation coefficent (R)

Sample and replicate similarity with PCA

Report info
The template for this report is located in ./nf-core-crispriscreen/bin/counts_summary.Rmd.
Date: 2022-04-28
Author: Michael Jahn, PhD
Affilations:
- Science For Life Laboratory (KTH), Stockholm, Sweden
- Max-Planck-Unit for the Science of Pathogens, Berlin, Germany
Session Info
R version 4.3.2 (2023-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 22.04.3 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so; LAPACK version 3.10.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=sv_SE.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=sv_SE.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=sv_SE.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=sv_SE.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Stockholm
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] Hmisc_5.1-1 tidyr_1.3.0 ggplot2_3.4.4 dplyr_1.0.10
loaded via a namespace (and not attached):
[1] sass_0.4.7 utf8_1.2.4 generics_0.1.3 stringi_1.7.12
[5] digest_0.6.33 magrittr_2.0.3 evaluate_0.23 grid_4.3.2
[9] fastmap_1.1.1 jsonlite_1.8.7 nnet_7.3-19 backports_1.4.1
[13] DBI_1.1.3 Formula_1.2-5 gridExtra_2.3 purrr_1.0.2
[17] fansi_1.0.5 scales_1.2.1 jquerylib_0.1.4 cli_3.6.1
[21] rlang_1.1.2 munsell_0.5.0 base64enc_0.1-3 withr_2.5.0
[25] cachem_1.0.8 yaml_2.3.7 tools_4.3.2 checkmate_2.1.0
[29] htmlTable_2.4.2 colorspace_2.1-0 assertthat_0.2.1 vctrs_0.6.4
[33] R6_2.5.1 rpart_4.1.23 lifecycle_1.0.4 stringr_1.5.0
[37] htmlwidgets_1.5.4 foreign_0.8-86 cluster_2.1.6 pkgconfig_2.0.3
[41] pillar_1.9.0 bslib_0.5.1 gtable_0.3.4 data.table_1.14.8
[45] glue_1.6.2 highr_0.10 xfun_0.41 tibble_3.2.1
[49] tidyselect_1.2.0 rstudioapi_0.14 knitr_1.45 farver_2.1.1
[53] htmltools_0.5.7 labeling_0.4.2 rmarkdown_2.25 compiler_4.3.2
---
title: "Read counts summary"
author: "SYSTEM: `r version[13]`"
date: "DATE: `r Sys.time()`"
params:
  cpus: 2
  artifact_dir: artifacts
  input_dir: ./
  meta: ""
output:
  html_notebook:
    theme: cosmo
    toc: yes
    number_sections: yes
  html_document:
    toc: yes
    df_print: paged
---

```{r setup, include = FALSE}
knitr::opts_chunk$set(echo = FALSE)
```

# Requirements

- if not all dependencies are satisfied by R environment, try to install additional libraries `dplyr`, `ggplot2`, `tidyr`, `Hmisc`
- loading libraries

```{r}
list_req_packages <- c("dplyr", "ggplot2", "tidyr", "Hmisc")
list_to_install <- setdiff(list_req_packages, rownames(installed.packages()))

if (length(list_to_install)) {
    pkdir <- paste0(system("echo ${HOME}", intern = TRUE), "/.R")
    system(paste0("mkdir ", pkdir))
    .libPaths(new = pkdir)
    install.packages(pkgs = list_to_install, lib = pkdir)
    print(paste0("Missing package(s) ", paste(list_to_install, collapse = ", "), " are installed to '", pkdir, "'."))
} else {
    print(paste0("Required package(s) ", paste(list_req_packages, collapse = ", "), " are already installed."))
}
```

- loading libraries

```{r}
suppressPackageStartupMessages({
    for (pkg in list_req_packages) {
        library(pkg, character.only = TRUE)
    }
})
print(paste0("Required package(s) ", paste(list_req_packages, collapse = ", "), " are loaded."))
```

# Sample overview

## Data import

- Checking if result file(s) are available:

```{r}
# get current working directory
wd <- getwd()
input_pattern <- "all_counts.tsv"

# check input files and compile small table
input_files <- grep(list.files(wd), pattern = input_pattern, value = TRUE)
if (length(input_files) == 1) {
    df_input <- bind_cols(
        data.frame(input_files),
        file.info(paste(wd, input_files, sep = "/"))
    ) %>%
        mutate(size = paste(size / 1e6, "MB"))
    rownames(df_input) <- NULL
    df_input[c(1, 2, 3, 4, 5, 10)]
} else {
    stop(paste0("Required input file(s) '", input_pattern, "' were not found."))
}
```

- Importing result table(s):

```{r}
# load counts matrix
df_counts <- read.delim(paste0(wd, "/", input_pattern))
df_counts <- tidyr::pivot_longer(df_counts,
    cols = 3:ncol(df_counts),
    names_to = "sample", values_to = "n_reads"
)
# sort
df_counts <- arrange(df_counts, sample)
print("Import of counts table complete.")
```

## Sample table

- overview of samples

```{r}
# list of samples + generic options
list_samples <- unique(df_counts$sample)
figwidth <- 9
figheight <- round(1 + (length(list_samples) / 4))
figheight2 <- 3 * figheight

# output sample table
test <- df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::summarize(
        barcodes = length(unique(sgRNA)),
        total_reads = sum(n_reads, na.rm = TRUE),
        min_reads = min(n_reads, na.rm = TRUE),
        mean_reads = mean(n_reads, na.rm = TRUE),
        max_reads = max(n_reads, na.rm = TRUE),
    )
```

# Quality control

```{r, warning = FALSE}
# define a custom ggplot2 theme (just for prettiness)
# custom ggplot2 theme that is reused for all later plots
custom_colors <- c("#E7298A", "#66A61E", "#E6AB02", "#7570B3", "#B3B3B3", "#1B9E77", "#D95F02", "#A6761D")
custom_range <- function(n = 5) {
    colorRampPalette(custom_colors[c(1, 5, 2)])(n)
}

custom_theme <- function(base_size = 12, base_line_size = 1.0, base_rect_size = 1.0, ...) {
    theme_light(base_size = base_size, base_line_size = base_line_size, base_rect_size = base_rect_size) + theme(
        title = element_text(colour = grey(0.4), size = 10),
        plot.margin = unit(c(12, 12, 12, 12), "points"),
        axis.ticks.length = unit(0.2, "cm"),
        axis.ticks = element_line(colour = grey(0.4), linetype = "solid", lineend = "round"),
        axis.text.x = element_text(colour = grey(0.4), size = 10),
        axis.text.y = element_text(colour = grey(0.4), size = 10),
        panel.grid.major = element_line(size = 0.6, linetype = "solid", colour = grey(0.9)),
        panel.grid.minor = element_blank(),
        panel.border = element_rect(linetype = "solid", colour = grey(0.4), fill = NA, size = 1.0),
        panel.background = element_blank(),
        strip.background = element_blank(),
        strip.text = element_text(colour = grey(0.4), size = 10, margin = unit(rep(3, 4), "points")),
        legend.text = element_text(colour = grey(0.4), size = 10),
        legend.title = element_blank(),
        legend.background = element_blank(),
        ...
    )
}
```

## Total number of mapped reads per sample

```{r, fig.width = figwidth, fig.height = figheight, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::summarize(n_reads = sum(n_reads)) %>%
    ggplot(aes(x = sample, y = n_reads)) +
    coord_flip() +
    geom_col(fill = custom_colors[1], alpha = 0.7) +
    labs(x = "", y = "total number of mapped reads") +
    custom_theme()
```

## Number of individual barcodes per sample

```{r, fig.width = figwidth, fig.height = figheight, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::summarize(`unique barcodes per sample` = sum(n_reads > 0)) %>%
    ggplot(aes(x = sample, y = `unique barcodes per sample`)) +
    geom_col(fill = custom_colors[1], alpha = 0.7) +
    labs(x = "") +
    coord_flip() +
    custom_theme()
```

## Number of missing barcodes per sample

```{r, fig.width = figwidth, fig.height = figheight, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::summarize(`missing barcodes per sample` = sum(n_reads == 0)) %>%
    ggplot(aes(x = sample, y = `missing barcodes per sample`)) +
    geom_col(fill = custom_colors[1], alpha = 0.7) +
    labs(x = "") +
    coord_flip() +
    custom_theme()
```

## Number of barcodes per gene, per sample

```{r, fig.width = figwidth, fig.height = figheight, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample, Gene) %>%
    dplyr::summarize(`unique barcodes` = length(unique(sgRNA))) %>%
    dplyr::count(`unique barcodes`) %>%
    ggplot(aes(x = sample, y = n, fill = factor(`unique barcodes`))) +
    geom_col(alpha = 0.7) +
    geom_text(aes(
        x = sample,
        y = unlist((tapply(n, sample, function(x) cumsum(rev(x)) - (rev(x) / 2)))),
        label = rev(`unique barcodes`)
    ), color = "white") +
    labs(x = "") +
    coord_flip() +
    scale_fill_manual(values = colorRampPalette(custom_colors[1:5])(9)) +
    custom_theme(legend.position = 0)
```

## Read count distribution, per sample (capped at 1000 barcodes)

```{r, fig.width = figwidth, fig.height = figheight, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::slice(1:1000) %>%
    ggplot(aes(x = sample, y = log10(n_reads))) +
    geom_violin(
        trim = FALSE, fill = custom_colors[1],
        alpha = 0.7, col = "white"
    ) +
    coord_flip() +
    stat_summary(fun.data = mean_sdl, geom = "pointrange", size = 0.5, col = grey(0.3)) +
    custom_theme()
```

## Number of reads per barcode, per sample

```{r, fig.width = figwidth, fig.height = figheight2, warning = FALSE}
df_counts %>%
    ggplot(aes(x = log2(n_reads))) +
    geom_histogram(fill = custom_colors[1], alpha = 0.7, bins = 30) +
    labs(y = "", x = expression("log"[2] * " reads per barcode")) +
    facet_wrap(~sample, ncol = 2) +
    custom_theme()
```

## Top 10 most abundant barcodes, per sample

```{r, fig.width = figwidth, fig.height = figheight2, warning = FALSE}
df_counts %>%
    dplyr::group_by(sample) %>%
    dplyr::arrange(sample, desc(n_reads)) %>%
    dplyr::mutate(rank = seq_along(sgRNA)) %>%
    dplyr::filter(between(rank, 1, 10)) %>%
    ggplot(aes(x = factor(rank), y = n_reads)) +
    geom_col(fill = custom_colors[1], alpha = 0.7, width = 1) +
    labs(y = "n reads", x = "barcodes ranked by abundance") +
    facet_wrap(~sample, ncol = 2) +
    custom_theme()
```

## Cumulative read count distribution and population equality

```{r, fig.width = figwidth, fig.height = figheight2, warning = FALSE}
df_auc <- df_counts %>%
    dplyr::arrange(sample, desc(n_reads)) %>%
    dplyr::group_by(sample) %>%
    dplyr::mutate(
        pc_barcodes = 100 * seq_along(n_reads) / n(),
        pc_reads = 100 * n_reads / (sum(n_reads))
    ) %>%
    dplyr::mutate(pc_barcodes = round(pc_barcodes)) %>%
    dplyr::group_by(sample, pc_barcodes) %>%
    dplyr::summarize(pc_reads = sum(pc_reads), .groups = "drop_last") %>%
    dplyr::mutate(pc_reads = cumsum(pc_reads))

df_auc %>%
    ggplot(aes(x = pc_barcodes, y = pc_reads, group = sample)) +
    geom_line(linewidth = 1.0, color = custom_colors[1]) +
    geom_abline(
        slope = 1, intercept = 0, linewidth = 1.0,
        linetype = 2, color = grey(0.5)
    ) +
    facet_wrap(~sample, ncol = 2) +
    lims(x = c(0, 100), y = c(0, 100)) +
    labs(x = "% of barcodes", y = "% of reads") +
    custom_theme()
```

```{r, warning = FALSE}
calc_auc <- function(x, y) {
    sum(diff(x) * (head(y, -1) + tail(y, -1))) / 2
}
df_auc %>%
    dplyr::summarize(
        auc = calc_auc(pc_barcodes, pc_reads),
        gini = (auc - 5000) / 5000
    ) %>%
    mutate(quality = case_when(
        gini <= 0.2 ~ "OK",
        gini > 0.2 & gini <= 0.5 ~ "warning: inequal read distribution",
        gini > 0.5 ~ "warning: extremely inequal read distribution"
    ))
```


## Sample and replicate correlation coefficent (R)

```{r, fig.width = 7.5, fig.height = 7, warning = FALSE}
df_counts %>%
    tidyr::pivot_wider(names_from = "sample", values_from = "n_reads") %>%
    dplyr::select(-c(1:2)) %>%
    cor() %>%
    dplyr::as_tibble() %>%
    dplyr::mutate(sample1 = colnames(.)) %>%
    tidyr::pivot_longer(
        cols = !sample1,
        names_to = "sample2", values_to = "cor_coef"
    ) %>%
    ggplot(aes(x = sample1, y = sample2, fill = cor_coef)) +
    geom_tile() +
    geom_text(color = grey(0.4), aes(label = round(cor_coef, 2))) +
    custom_theme() +
    labs(title = "", x = "", y = "") +
    theme(axis.text.x = element_text(angle = 90, vjust = 0.5, hjust = 1)) +
    scale_fill_gradientn(
        colours = c(custom_colors[1], grey(0.9), custom_colors[2]),
        limits = c(-1, 1)
    )
```

## Sample and replicate similarity with PCA

```{r, fig.width = 7, fig.height = 7, warning = FALSE}
pca_result <- df_counts %>%
    tidyr::pivot_wider(names_from = "sample", values_from = "n_reads") %>%
    dplyr::select(-c(1:2)) %>%
    as.matrix() %>%
    t() %>%
    replace(., is.na(.), 0) %>%
    prcomp()

df_PCA <- pca_result$x %>%
    as_tibble(rownames = "sample")

df_PCA %>%
    ggplot(aes(x = PC1, y = -PC2, size = PC3, color = sample, label = sample)) +
    geom_point(alpha = 0.7) +
    geom_text(size = 2.5, show.legend = FALSE) +
    labs(
        title = "PCA, first three principal components",
        subtitle = "Point size encodes PC3", x = "PC1", y = "PC2"
    ) +
    custom_theme(legend.position = 0, aspect = 1) +
    scale_color_manual(values = colorRampPalette(custom_colors)(nrow(df_PCA))) +
    guides(size = "none")
```

# Report info

The template for this report is located in `./nf-core-crispriscreen/bin/counts_summary.Rmd`.

Date: 2022-04-28

Author: Michael Jahn, PhD

Affilations:

  - Science For Life Laboratory (KTH), Stockholm, Sweden
  - Max-Planck-Unit for the Science of Pathogens, Berlin, Germany

# Session Info

```{r}
sessionInfo()
```
